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Table 3 Top 5 upstream regulators predicted to mimic TREM2 KO (group 1 genes)

From: TREM2 Alzheimer’s variant R47H causes similar transcriptional dysregulation to knockout, yet only subtle functional phenotypes in human iPSC-derived macrophages

Name

Synonyms

Function

Activation Z-score

p value of overlap

Number of group 1 genes regulated

Interleukin-10

IL10(A), CSIF, GVHDS, TGIF

Cytokine

+ 2.13

8 × 10− 22

60

Interleukin-27

IL27(A), IL30, P38

Cytokine

+ 2.57

2 × 10− 21

36

Fas receptor

FAS, FasR, FASTM, ALPS1A, APO-1, APT1, CD95, TNFRSF6

Receptor for Fas ligand, initiates apoptosis

+ 2.44

3 × 10− 21

56

Interferon-α2

IFNA2(A/B/C)

Cytokine, type I interferon

+ 3.46

2 × 10−19

43

Signal transducer and activator of transcription 1

STAT1, ISGF-3, CANDF7, IMD31(A/B/C), STAT91

Transcription factor downstream of interferon receptors

+ 2.48

2 × 10−15

47

  1. Upstream regulators predicted by IPA to be activatory, ordered by lowest p value