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Table 1 Variants exclusive of family members and satisfying the filtering criteria

From: Exome sequencing in an Italian family with Alzheimer’s disease points to a role for seizure-related gene 6 (SEZ6) rare variant R615H

Chr

Position

Gene

Variant

Amino acid change

(%)

dbSNP

ID

Found in (family code)

chr8

144,589,984

ZC3H3

c.1646

C > T

p.Ser549

Leu

0.5%

rs

149,025,999

PR 1, PR 2, PR 3, PR 4, PR 5, PR 7, PR 9

chr9

738,341

KANK1

c.3391

G > C

p.Ala1131Pro

0.1%

rs

180,816,986

PR1, PR3, PR5

chr17

27,286,417

SEZ6

c.1844

G > A

p.Arg615

His

0.01%

rs

371,753,097

PR1, PR2, PR5

chr20

57,598,807

TUBB1

c.326

G > A

p.Gly109

Glu

0.2%

rs

41,303,899

PR1, PR2, PR3, PR5

chr22

24,717,509

SPECC1L

c.562

C > T

p.Leu188

Phe

0.9%

rs

56,168,869

PR1, PR2, PR3, PR5, PR9

  1. Chr Chromosome number
  2. Percentage population frequency refers to data of the European population frequency derived from the 1000 Genomes Project at the time the manuscript was written. See the “Methods” section of text for further details. Chromosome positions refer to the hg19 assembly. The gene of interest (SEZ6) is highlighted in bold, and members affected with AD are Italic