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Table 2 Table of genome-wide significant rQTL p values based on 200 million parametric bootstraps

From: Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels

Trait pair

SNP

Chrom

Location

Maj/Min (MAF)

p value

Gene

Left gene

Right gene

tau/Aβ42

rs74131475

1

194252450

C/T (0.089)

3.33 × 10–8

LOC107985242

EEF1A1P14

RNU6-983P

tau/Aβ42

rs1936361

10

102370841

C/T (0.444)

5.00 × 10–9

 

HIF1AN

PAX2

tau/Aβ42

rs118023102

16

75983693

G/A (0.027)

3.33 × 10–8

 

LOC105371348

LOC105371349

tau/Aβ42

rs74025622a

16

75999881

A/G (0.028)

< 5 × 10–9

 

LOC105371348

LOC105371349

p-tau/Aβ42

rs15205b,c

3

44966906

A/T (0.028)

< 5 × 10–9

ZDHHC3

TGM4

EXOSC7

p-tau/Aβ42

rs79099429b,c

3

44993764

T/C (0.029)

< 5 × 10–9

ZDHHC3

TGM4

EXOSC7

p-tau/Aβ42

rs689167

6

52785560

G/A (0.362)

< 5 × 10–9

 

GSTA3

GSTA9P

p-tau/Aβ42

rs1036819a

8

135611945

A/C (0.261)

< 5 × 10–9

ZFAT

LOC100129104

LOC286094

p-tau/Aβ42

rs112959610

13

57488227

G/A (0.465)

2.67 × 10–8

 

RN7SKP6

PRR20A

p-tau/Aβ42

rs8027714

15

24964597

G/A (0.201)

< 5 × 10–9

 

C15orf2

SNRPN

  1. Chrom Chromosome, MAF minor allele frequency, Maj Major Allele, Min Minor Allele, rQTL relationship quantitative trait loci, SNP single nucleotide polymorphism
  2. aNominally significant for case/control status
  3. bNominally significant for rate of decline
  4. cNominally significant for Aβ42