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Table 2 Representative top 30 upstream regulators of genes differentially expressed between glutamate and glutamate + candesartan

From: An integrative genome-wide transcriptome reveals that candesartan is neuroprotective and a candidate therapeutic for Alzheimer’s disease

Upstream regulator

Molecule type

p value of overlap

Tumor necrosis factor

Cytokine

1.06E-74

Lipopolysaccharide

Chemical drug

3.26E-63

Interleukin-1beta

Cytokine

1.02E-61

Interferon gamma

Cytokine

4.75E-61

Transforming growth factor beta-1

Growth factor

1.99E-49

Nuclear factor kappa B (complex)

Complex

1.80E-43

Dexamethasone

Chemical drug

2.74E-42

Interleukin-6

Cytokine

2.16E-40

Colony Stimulating Factor 2 (CSF2)

Cytokine

1.57E-39

Interleukin-10

Cytokine

6.06E-39

Of Kappa Light Polypeptide Gene Cin B Cells (IKBKB)

Kinase

7.92E-39

Interleukin-13

Cytokine

1.46E-38

Poly rI:rC-RNA

Chemical reagent

4.53E-38

Signal transducer and activator of transcription 3 (STAT3)

Transcription regulator

1.80E-37

Amyloid precursor protein

Other

2.86E-37

Nuclear Factor Of Kappa Light Polypeptide Gene Enhancer in B Cell Inhibitor, Alpha (NFKBIA)

Transcription regulator

4.57E-36

Myeloid differentiation primary response gene 88 (MYD88)

Other

4.97E-36

Tretinoin

Chemical—endogenous mammalian

6.44E-36

E. coli B4 lipopolysaccharide

Chemical toxicant

1.36E-35

PD98059

Chemical—kinase inhibitor

1.85E-35

Beta-estradiol

Chemical—endogenous mammalian

9.64E-35

Interleukin-4

Cytokine

1.46E-34

Apolipoprotein E

Transporter

2.32E-33

Platelet-derived growth factor BB

Complex

2.99E-33

Conserved Helix -Loop Helix Ubiquitous Kinase (CHUK)

Kinase

6.05E-33

Toll-like receptor 4

Transmembrane receptor

2.55E-32

Angiotensinogen (AGT)

Growth factor

3.51E-32

Phorbol myristate acetate

Chemical drug

6.73E-32

SB203580

Chemical—kinase inhibitor

1.17E-31

Tumor necrosis factor superfamily member 11 (TNFSF11)

Cytokine

1.79E-31

  1. A full and detailed list is provided as Additional file 7: Table S4